There's a large number of possibilities for bogging.

1. The CMCV runners sticking either a linkage or actuator.
2. Dirty throttle body or MAF, though that would usually bog whether it's just been started.
3. Vacuum leak, including the seal on the air box, but like #2 it'll usually do it all the time.
4. Oxygen sensors bad. The PCM ignores the trims for a short period at startup, but takes them into account once throttle the PCM's catalytic warm up cycle.
5. None factory intake causing a false MAF reading, and causing a lean condition. Would need the PCM's tune adjusted for this.
6. Check the fuel pump driver module (FPDM). They are known to have the bottom corrode. It sits over the top of the read axle. If it's having issues the fuel system is going to have problems maintaining high enough pressure.